MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2767766849638525
cnr4.61384766098092
efc0.6185719049502052
fber76.3979721069336
fwhmavg3.9621666666666666
fwhmx3.74466
fwhmy4.22329
fwhmz3.91855
icvscsf0.1972487074248164
icvsgm0.47221181537041157
icvswm0.33053947720477206
inumed1.0297771692276
inurange0.32632865011692047
qi10.0
qi20.0015880226594380603
rpvecsf21.916037567671538
rpvegm10.401458851535914
rpvewm16.917785448322118
sizex180
sizey256
sizez256
snrcsf2.2565342160860813
snrgm9.900233956833167
snrtotal10.21736234576923
snrwm18.495318864388437
snrdcsf9.84777010990527
snrdgm22.801505875511886
snrdtotal23.328238901033558
snrdwm37.33544071768351
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.2750021181932967
summarybgmad17.547494888305664
summarybgmean56.636390686035156
summarybgmedian53.52495193481445
summarybgn2619965.0
summarybgp0531.06581153869629
summarybgp9593.21530151367186
summarybgstdv19.75057601928711
summarycsfk-0.022811087206220826
summarycsfmad127.65260314941406
summarycsfmean278.4424133300781
summarycsfmedian263.76751708984375
summarycsfn21181.0
summarycsfp05116.51171112060547
summarycsfp95480.56396484375
summarycsfstdv116.88778686523438
summarygmk0.21365994735471938
summarygmmad59.70731735229492
summarygmmean613.08203125
summarygmmedian610.7267456054688
summarygmn48841.0
summarygmp05515.2003784179688
summarygmp95718.2206420898438
summarygmstdv61.68748092651367
summarywmk0.9998351162966927
summarywmmad48.03743362426758
summarywmmean996.9794921875
summarywmmedian1000.0108032226562
summarywmn199875.0
summarywmp05899.7044677734375
summarywmp951078.9133422851562
summarywmstdv54.06818389892578
tpmoverlapcsf0.2163722813129425
tpmoverlapgm0.5395950078964233
tpmoverlapwm0.5438985824584961
wm2max0.5880903720978858

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumbc07bfe15cde120229c17d5003704e76
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.