MRIQC: individual T1w report

Summary

Subject ID: 025_ControlPre.
Date and time: 2018-05-07, 00:06.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2767766849638525
cnr			4.61384766098092
efc			0.6185719049502052
fber			76.3979721069336
fwhm	avg		3.9621666666666666
fwhm	x		3.74466
fwhm	y		4.22329
fwhm	z		3.91855
icvs	csf		0.1972487074248164
icvs	gm		0.47221181537041157
icvs	wm		0.33053947720477206
inu	med		1.0297771692276
inu	range		0.32632865011692047
qi	1		0.0
qi	2		0.0015880226594380603
rpve	csf		21.916037567671538
rpve	gm		10.401458851535914
rpve	wm		16.917785448322118
size	x		180
size	y		256
size	z		256
snr	csf		2.2565342160860813
snr	gm		9.900233956833167
snr	total		10.21736234576923
snr	wm		18.495318864388437
snrd	csf		9.84777010990527
snrd	gm		22.801505875511886
snrd	total		23.328238901033558
snrd	wm		37.33544071768351
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.2750021181932967
summary	bg	mad	17.547494888305664
summary	bg	mean	56.636390686035156
summary	bg	median	53.52495193481445
summary	bg	n	2619965.0
summary	bg	p05	31.06581153869629
summary	bg	p95	93.21530151367186
summary	bg	stdv	19.75057601928711
summary	csf	k	-0.022811087206220826
summary	csf	mad	127.65260314941406
summary	csf	mean	278.4424133300781
summary	csf	median	263.76751708984375
summary	csf	n	21181.0
summary	csf	p05	116.51171112060547
summary	csf	p95	480.56396484375
summary	csf	stdv	116.88778686523438
summary	gm	k	0.21365994735471938
summary	gm	mad	59.70731735229492
summary	gm	mean	613.08203125
summary	gm	median	610.7267456054688
summary	gm	n	48841.0
summary	gm	p05	515.2003784179688
summary	gm	p95	718.2206420898438
summary	gm	stdv	61.68748092651367
summary	wm	k	0.9998351162966927
summary	wm	mad	48.03743362426758
summary	wm	mean	996.9794921875
summary	wm	median	1000.0108032226562
summary	wm	n	199875.0
summary	wm	p05	899.7044677734375
summary	wm	p95	1078.9133422851562
summary	wm	stdv	54.06818389892578
tpm	overlap	csf	0.2163722813129425
tpm	overlap	gm	0.5395950078964233
tpm	overlap	wm	0.5438985824584961
wm2max			0.5880903720978858

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	bc07bfe15cde120229c17d5003704e76
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.